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I have ran into this. The solution is to put something like “Always use `git add -A` or `git commit -a`” in your AGENTS/CLAUDE.md


Small, targeted commits are more professional than sweeping `git add -A` commits, but even when specifying my requirements through whichever context management system of the week, I still have issues with it sometimes. It seems to be much worse on the new 4.6 model.




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